From what you write neither dog is particularly comfortable in the presence of the other one and they need work fro you all to help that. The younger dog also sounds like it has a little bit of resource guarding going on too which will emphasise the discomfort. This has nothing to do with how either dog was trained. Outside they have the opportunity to give each other space but inside are forced into closer quarters than either is comfortable with.
You need to help the dogs out here and reduce conflict as much as possible, so if the younger dog has food or a toy do not allow the other dog close, likewise the f the older dog is resting* comfortably do not allow the other dog close. You can also do things like have small treats and reward the dogs for being in the presence of the other dog with lots of nice rewards plus teach them to take turns so ask both to sit, then say Dog A and give a treat and Dog B and give a treat. Manage all the indoor interactions so all can stay calm and they can learn to get on.
Incidentally you appear to have decided your training methods are the best, Molly came to me at 17 months because she was fighting with the other dog in her household as well as a whole host of other issues. She now lives with my other dog and has spent a lot of time over the years in the company of multiple dogs. All training is positive and reward based, it does not mean she does not know the rules and follow them. She has also competed in scent trials and attained trick dog awards.
You need to help the dogs out here and reduce conflict as much as possible, so if the younger dog has food or a toy do not allow the other dog close, likewise the f the older dog is resting* comfortably do not allow the other dog close. You can also do things like have small treats and reward the dogs for being in the presence of the other dog with lots of nice rewards plus teach them to take turns so ask both to sit, then say Dog A and give a treat and Dog B and give a treat. Manage all the indoor interactions so all can stay calm and they can learn to get on.
Incidentally you appear to have decided your training methods are the best, Molly came to me at 17 months because she was fighting with the other dog in her household as well as a whole host of other issues. She now lives with my other dog and has spent a lot of time over the years in the company of multiple dogs. All training is positive and reward based, it does not mean she does not know the rules and follow them. She has also competed in scent trials and attained trick dog awards.